STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_70RelA; spoT_relA: RelA/SpoT family protein (739 aa)    
Predicted Functional Partners:
rumA
rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   0.939
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
 
 0.929
ppx
annotation not available
  
 
 0.925
rpoC
rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
   
 0.919
mazG
Nucleoside triphosphate pyrophosphohydrolase; mazG: MazG family protein
  
  0.917
rpoB
rpoB: DNA-directed RNA polymerase, beta subunit
   
 0.915
rpoA
rpoA: DNA-directed RNA polymerase, alpha subunit
    
 0.910
nrdD
nrdD: anaerobic ribonucleoside-triphosphate reductase
    
  0.905
cyaA
annotation not available
   
 
  0.901
ndk
annotation not available
    
  0.901
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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