STRINGSTRING
dgkA protein (Pasteurella multocida) - STRING interaction network
"dgkA" - annotation not available in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgkAannotation not available (118 aa)    
Predicted Functional Partners:
plsC
annotation not available (241 aa)
       
  0.914
DR93_2097
annotation not available (309 aa)
       
  0.909
DR93_2109
annotation not available (289 aa)
       
  0.908
DR93_286
annotation not available (337 aa)
     
  0.831
rumA
rumA- 23S rRNA (uracil-5-)-methyltransferase RumA (437 aa)
     
      0.803
recO
Reco- DNA repair protein RecO; Belongs to the RecO family (240 aa)
   
        0.787
DR93_70
RelA; spoT_relA- RelA/SpoT family protein (739 aa)
              0.771
eptA
annotation not available (543 aa)
 
        0.760
rsmE
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (244 aa)
   
        0.547
DR93_923
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (158 aa)
 
     
  0.541
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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