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rpoD protein (Pasteurella multocida) - STRING interaction network
rpoD_Cterm: RNA polymerase sigma factor RpoD in Pasteurella multocida
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoDrpoD_Cterm- RNA polymerase sigma factor RpoD (622 aa)    
Predicted Functional Partners:
rpoB
rpoB- DNA-directed RNA polymerase, beta subunit (1342 aa)
 
 
  0.990
rpoC
rpoC_TIGR- DNA-directed RNA polymerase, beta’ subunit (1417 aa)
 
 
  0.990
rpoA
rpoA- DNA-directed RNA polymerase, alpha subunit (329 aa)
   
 
  0.984
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (89 aa)
 
 
  0.942
DR93_811
annotation not available (213 aa)
       
 
  0.924
dnaG
annotation not available (582 aa)
 
 
  0.904
secA
secA- preprotein translocase, SecA subunit (895 aa)
 
 
  0.847
gyrB
gyrB- DNA gyrase, B subunit (806 aa)
 
 
  0.766
nusA
annotation not available (493 aa)
 
 
  0.765
dksA
dksA- RNA polymerase-binding protein DksA (145 aa)
   
 
  0.757
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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