STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsUS21p: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)    
Predicted Functional Partners:
rpmH
rpmH_bact: ribosomal protein L34
   
 
 0.986
rpsT
S20: ribosomal protein S20
  
 
 0.978
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20
  
 
 0.973
rplM
rplM_bact: ribosomal protein L13
   
 
 0.970
rpmB
L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family
  
 
 0.969
rpsP
S16: ribosomal protein S16
 
 
 0.968
rpmA
L27: ribosomal protein L27
   
 
 0.967
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
   
 
 0.966
rpmG
rpmG_bact: ribosomal protein L33
   
 
 0.966
rpsI
annotation not available
  
 
 0.960
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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