priB protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

priB

annotation not available (108 aa)

Predicted Functional Partners:

rpsF

0.998

rpsR

0.997

rpsJ

0.968

rplI

0.953

rplV

0.901

rplW

0.858

rplB

0.849

rpsH

0.843

rplR

0.841

rpsC

0.837

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
priB	rplB	DR93_788	DR93_265	annotation not available	rplB_bact: ribosomal protein L2	0.849
priB	rplI	DR93_788	DR93_790	annotation not available	L9: ribosomal protein L9	0.953
priB	rplR	DR93_788	DR93_252	annotation not available	L18_bact: ribosomal protein L18	0.841
priB	rplV	DR93_788	DR93_263	annotation not available	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome	0.901
priB	rplW	DR93_788	DR93_266	annotation not available	annotation not available	0.858
priB	rpsC	DR93_788	DR93_262	annotation not available	rpsC_bact: ribosomal protein S3	0.837
priB	rpsF	DR93_788	DR93_787	annotation not available	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA	0.998
priB	rpsH	DR93_788	DR93_254	annotation not available	annotation not available	0.843
priB	rpsJ	DR93_788	DR93_269	annotation not available	rpsJ_bact: ribosomal protein S10	0.968
priB	rpsR	DR93_788	DR93_789	annotation not available	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.997
rplB	priB	DR93_265	DR93_788	rplB_bact: ribosomal protein L2	annotation not available	0.849
rplB	rplI	DR93_265	DR93_790	rplB_bact: ribosomal protein L2	L9: ribosomal protein L9	0.979
rplB	rplR	DR93_265	DR93_252	rplB_bact: ribosomal protein L2	L18_bact: ribosomal protein L18	0.997
rplB	rplV	DR93_265	DR93_263	rplB_bact: ribosomal protein L2	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome	0.999
rplB	rplW	DR93_265	DR93_266	rplB_bact: ribosomal protein L2	annotation not available	0.999
rplB	rpsC	DR93_265	DR93_262	rplB_bact: ribosomal protein L2	rpsC_bact: ribosomal protein S3	0.999
rplB	rpsF	DR93_265	DR93_787	rplB_bact: ribosomal protein L2	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA	0.991
rplB	rpsH	DR93_265	DR93_254	rplB_bact: ribosomal protein L2	annotation not available	0.999
rplB	rpsJ	DR93_265	DR93_269	rplB_bact: ribosomal protein L2	rpsJ_bact: ribosomal protein S10	0.999
rplB	rpsR	DR93_265	DR93_789	rplB_bact: ribosomal protein L2	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.994

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