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rpmB protein (Pasteurella multocida) - STRING interaction network
"rpmB" - L28: ribosomal protein L28 in Pasteurella multocida
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmBL28- ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family (78 aa)    
Predicted Functional Partners:
rpmG
rpmG_bact- ribosomal protein L33 (56 aa)
 
 
  0.997
rplQ
L17- ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family (129 aa)
   
 
  0.985
rplI
L9- ribosomal protein L9 (149 aa)
     
 
  0.984
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
   
 
  0.983
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site (101 aa)
 
 
  0.981
rpmF
rpmF_bact- ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family (56 aa)
   
 
  0.981
rpsH
annotation not available (130 aa)
     
 
  0.980
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (116 aa)
   
 
  0.980
rpsJ
rpsJ_bact- ribosomal protein S10 (103 aa)
     
 
  0.980
rplL
L12- ribosomal protein L7/L12 (122 aa)
     
 
  0.979
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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