STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_851DeaD; Helicase conserved C-terminal domain protein (610 aa)    
Predicted Functional Partners:
recQ
recQ: ATP-dependent DNA helicase RecQ
 
 
0.850
DR93_850
Lipoprotein NlpI
  
 
 0.609
pnp
Polynucleotide phosphorylase/polyadenylase; Polynuc_phos: polyribonucleotide nucleotidyltransferase
  
 
 0.583
rraA
rraA_entero: regulator of ribonuclease activity A
    
 
 0.459
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
  
 
 0.405
tmcA
annotation not available
   
   0.405
sun
rsmB: ribosomal RNA small subunit methyltransferase B
  
 
 0.402
DR93_982
RNaseEG: ribonuclease, Rne/Rng family domain protein
   
 
 0.401
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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