accB protein (Pasteurella multocida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

accB

BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein (153 aa)

Predicted Functional Partners:

accC

0.999

accD

0.991

fabD

0.980

accA

0.974

fabH

0.961

pta

0.909

acs

0.907

aceF

0.906

leuA

0.900

pflB

0.900

Your Current Organism:

Pasteurella multocida

NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
accA	accB	DR93_1770	DR93_872	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	0.974
accA	accC	DR93_1770	DR93_873	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	accC- acetyl-CoA carboxylase, biotin carboxylase subunit	0.976
accA	accD	DR93_1770	DR93_1466	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	accD- acetyl-CoA carboxylase, carboxyl transferase, beta subunit	0.999
accA	aceF	DR93_1770	DR93_1735	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	Pyruvate dehydrogenase dihydrolipoyltransacetylase; PDHac_trf_long- dihydrolipoyllysine-residue acetyltransferase	0.901
accA	acs	DR93_1770	DR93_1526	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	Acetyl-CoA synthetase; ac_CoA_lig_AcsA- acetate--CoA ligase	0.911
accA	fabD	DR93_1770	DR93_19	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	fabD- malonyl CoA-acyl carrier protein transacylase	0.956
accA	fabH	DR93_1770	DR93_20	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	3-oxoacyl-[acyl-carrier-protein] synthase 3; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and/or straight-chain of fatty acids; Belongs to the FabH family	0.951
accA	leuA	DR93_1770	DR93_2136	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	leuA_bact- 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family	0.901
accA	pflB	DR93_1770	DR93_1998	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	PflB; Pyr_form_ly_1- formate acetyltransferase	0.900
accA	pta	DR93_1770	DR93_1535	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	Pta- phosphate acetyltransferase	0.907
accB	accA	DR93_872	DR93_1770	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	accA- acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	0.974
accB	accC	DR93_872	DR93_873	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	accC- acetyl-CoA carboxylase, biotin carboxylase subunit	0.999
accB	accD	DR93_872	DR93_1466	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	accD- acetyl-CoA carboxylase, carboxyl transferase, beta subunit	0.991
accB	aceF	DR93_872	DR93_1735	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	Pyruvate dehydrogenase dihydrolipoyltransacetylase; PDHac_trf_long- dihydrolipoyllysine-residue acetyltransferase	0.906
accB	acs	DR93_872	DR93_1526	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	Acetyl-CoA synthetase; ac_CoA_lig_AcsA- acetate--CoA ligase	0.907
accB	fabD	DR93_872	DR93_19	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	fabD- malonyl CoA-acyl carrier protein transacylase	0.980
accB	fabH	DR93_872	DR93_20	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	3-oxoacyl-[acyl-carrier-protein] synthase 3; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and/or straight-chain of fatty acids; Belongs to the FabH family	0.961
accB	leuA	DR93_872	DR93_2136	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	leuA_bact- 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family	0.900
accB	pflB	DR93_872	DR93_1998	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	PflB; Pyr_form_ly_1- formate acetyltransferase	0.900
accB	pta	DR93_872	DR93_1535	BCCP- acetyl-CoA carboxylase, biotin carboxyl carrier protein	Pta- phosphate acetyltransferase	0.909

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About