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mrdB protein (Pasteurella multocida) - STRING interaction network
"mrdB" - rodA_shape: rod shape-determining protein RodA in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrdBrodA_shape- rod shape-determining protein RodA; Belongs to the SEDS family (371 aa)    
Predicted Functional Partners:
mrdA
pbp2_mrdA- penicillin-binding protein 2 (644 aa)
 
  0.997
dacA
annotation not available (394 aa)
 
 
  0.948
mreB
annotation not available (351 aa)
 
  0.933
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family (144 aa)
 
        0.898
mreC
mreC- rod shape-determining protein MreC (349 aa)
 
 
  0.890
DR93_8
annotation not available (294 aa)
 
   
  0.874
DR93_6
Conserved hypothetical protein (98 aa)
            0.871
DR93_1930
annotation not available (601 aa)
 
  0.846
DR93_12
Uncharacterized protein (103 aa)
   
        0.783
DR93_922
annotation not available (372 aa)
 
        0.775
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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