STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmcAannotation not available (651 aa)    
Predicted Functional Partners:
rpsA
rpsA: ribosomal protein S1
   
 
 0.875
truD
annotation not available
 
  
 0.817
sun
rsmB: ribosomal RNA small subunit methyltransferase B
  
 
 0.809
truB
truB: tRNA pseudouridine(55) synthase
   
 
 0.808
rrmJ
rrmJ: ribosomal RNA large subunit methyltransferase J
   
   0.807
DR93_924
Uncharacterized protein
       0.792
rpoB
rpoB: DNA-directed RNA polymerase, beta subunit
   
   0.766
cysS
Cysteinyl-tRNA synthetase; cysS: cysteine--tRNA ligase
  
    0.763
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; ksgA: dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family
  
   0.758
rnd
Rnd: ribonuclease D
   
   0.749
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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