STRINGSTRING
rapA protein (Pasteurella multocida) - STRING interaction network
"rapA" - annotation not available in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rapAannotation not available (967 aa)    
Predicted Functional Partners:
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (89 aa)
     
      0.826
rpoC
rpoC_TIGR- DNA-directed RNA polymerase, beta’ subunit (1417 aa)
     
 
  0.808
rpoB
rpoB- DNA-directed RNA polymerase, beta subunit (1342 aa)
     
 
  0.798
rpoA
rpoA- DNA-directed RNA polymerase, alpha subunit (329 aa)
     
      0.790
DR93_97
annotation not available (219 aa)
   
   
  0.733
polA
Pola- DNA polymerase I (930 aa)
   
 
  0.678
topA
topA_bact- DNA topoisomerase I (868 aa)
 
 
  0.555
rep
Uncharacterized protein; Rep- ATP-dependent DNA helicase Rep (671 aa)
 
 
  0.477
DR93_99
Uncharacterized protein (142 aa)
              0.472
DR93_98
annotation not available (189 aa)
              0.472
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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