STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_982RNaseEG: ribonuclease, Rne/Rng family domain protein (1006 aa)    
Predicted Functional Partners:
pnp
Polynucleotide phosphorylase/polyadenylase; Polynuc_phos: polyribonucleotide nucleotidyltransferase
 
 
 0.959
eno
Enolase; Eno: phosphopyruvate hydratase
    
 
 0.932
rpoH
rpoH_proteo: alternative sigma factor RpoH
  
 
 0.661
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs
 
 
 
 0.626
pcnB
annotation not available
  
 
 0.621
rnc
RNaseIII: ribonuclease III
 
  
 0.583
orn
annotation not available
  
   
 0.562
rho
Rho: transcription termination factor Rho
  
   
 0.545
rpoD
rpoD_Cterm: RNA polymerase sigma factor RpoD
  
 
 0.541
arcB
annotation not available
     
 0.532
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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