STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK16439.1Predicted bifunctional transglycosylase/transpeptidase. (783 aa)    
Predicted Functional Partners:
ADK14655.1
Predicted multimodular transpeptidase-transglycosylase.
 
 
0.945
ADK14657.1
Predicted penicillin binding protein 1A, only N-term part.
 
 
0.942
dacA1
D-alanyl-D-alanine carboxypeptidase precursor; Belongs to the peptidase S11 family.
     
 0.907
dacC
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.907
ADK14201.1
D-alanyl-D-alanine carboxypeptidase related protein; Belongs to the peptidase S11 family.
     
 0.907
ADK14504.1
D-alanyl-D-alanine carboxypeptidase precursor; Belongs to the peptidase S11 family.
     
 0.907
ADK14636.1
D-alanyl-D-alanine carboxypeptidase.
     
  0.900
ftsW1
Predicted cell division protein; Belongs to the SEDS family.
  
   
 0.712
ftsI2
Predicted cell division protein.
 
 
 
 0.703
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
   
 0.702
Your Current Organism:
Clostridium ljungdahlii
NCBI taxonomy Id: 748727
Other names: C. ljungdahlii DSM 13528, Clostridium ljungdahlii DSM 13528, Clostridium ljungdahlii PETC, Clostridium ljungdahlii str. DSM 13528, Clostridium ljungdahlii strain DSM 13528
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.