STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBI_07203Hypothetical protein. (407 aa)    
Predicted Functional Partners:
tsaD
Putative DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.962
SBI_05717
COG3145 Alkylated DNA repair protein.
  
    0.580
SBI_07956
Beta-lactamase domain protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.553
SBI_07204
Hypothetical protein.
       0.530
SBI_06563
Hypothetical protein.
  
     0.499
SBI_05390
Putative integral membrane protein.
  
     0.487
SBI_08740
Hypothetical protein; COG0789 Predicted transcriptional regulators.
  
     0.468
SBI_07202
Hypothetical protein.
       0.465
SBI_04928
COG3973 Superfamily I DNA and RNA helicases.
  
     0.448
SBI_07054
COG0629 Single-stranded DNA-binding protein.
  
    0.425
Your Current Organism:
Streptomyces bingchenggensis
NCBI taxonomy Id: 749414
Other names: S. bingchenggensis BCW-1, Streptomyces bingchenggensis BCW-1, Streptomyces bingchenggensis str. BCW-1, Streptomyces bingchenggensis strain BCW-1
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