STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBI_08579Transposase IS4 family protein; COG3666 Transposase and inactivated derivatives. (520 aa)    
Predicted Functional Partners:
SBI_09362
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.584
ozmE
COG0236 Acyl carrier protein.
  
     0.562
SBI_03184
Hypothetical protein.
  
     0.549
SBI_01277
COG3547 Transposase and inactivated derivatives.
  
     0.520
SBI_08608
COG3547 Transposase and inactivated derivatives.
  
     0.516
SBI_09363
Putative transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators.
  
     0.482
SBI_01215
Hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.467
SBI_08578
Integrase catalytic region; COG2801 Transposase and inactivated derivatives.
       0.439
SBI_01616
IS116/IS110/IS902 family transposase; COG3547 Transposase and inactivated derivatives.
  
     0.436
SBI_08710
IS116/IS110/IS902 family transposase; COG3547 Transposase and inactivated derivatives.
  
     0.436
Your Current Organism:
Streptomyces bingchenggensis
NCBI taxonomy Id: 749414
Other names: S. bingchenggensis BCW-1, Streptomyces bingchenggensis BCW-1, Streptomyces bingchenggensis str. BCW-1, Streptomyces bingchenggensis strain BCW-1
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