STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ62277.1Transmembrane protein. (1291 aa)    
Predicted Functional Partners:
ADJ62276.1
Conserved hypothetical protein; S - Function unknown.
 
  
 0.961
ADJ62275.1
Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
  
 0.922
ADJ65498.1
Transmembrane protein.
  
  
 
0.900
ADJ62279.1
Conserved hypothetical protein; S - Function unknown.
 
   
 0.899
ADJ62280.1
Transmembrane protein.
 
   
 0.873
ADJ62282.1
VGR-related protein.
 
  
 0.871
ADJ62261.1
Conserved hypothetical protein; S - Function unknown.
 
  
 0.864
ADJ65507.1
Conserved hypothetical protein; S - Function unknown.
 
  
 0.864
ADJ62256.1
Transmembrane protein.
 
 
 0.853
ADJ65512.1
Type IV / VI secretion system transmembrane protein.
 
 
 0.853
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.