STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mhpD-22-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) protein. (281 aa)    
Predicted Functional Partners:
ADJ65965.1
Metal-dependent hydrolase of the TIM-barrel fold protein.
 
     0.686
ADJ62569.1
Metal-dependent hydrolase of the TIM-barrel fold protein.
 
     0.673
ADJ62565.1
Conserved hypothetical protein; S - Function unknown.
 
     0.618
hmgA
Homogentisate 1,2-dioxygenase protein; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.580
fabG-3
3-oxoacyl-(acyl-carrier protein) reductase protein.
  
 
 0.543
ADJ62564.1
Short-chain alcohol dehydrogenase protein.
  
 
 0.542
hpcH
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase protein; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.537
hpaF
5-carboxymethyl-2-hydroxymuconate delta-isomerase protein.
  
  
 0.532
ADJ62563.1
Conserved hypothetical protein; S - Function unknown; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.518
fabG-12
Short-chain alcohol dehydrogenase protein.
 
 
 0.512
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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