Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADJ62072.1 | ADJ63770.1 | Hsero_0553 | Hsero_2271 | Conserved hypothetical protein; S - Function unknown. | ATP-dependent DNA ligase protein. | 0.680 |
ADJ62817.1 | ADJ63770.1 | Hsero_1301 | Hsero_2271 | SMC domain protein. | ATP-dependent DNA ligase protein. | 0.740 |
ADJ62817.1 | ADJ63778.1 | Hsero_1301 | Hsero_2279 | SMC domain protein. | Exonuclease of the beta-lactamase fold involved in RNA processing protein. | 0.555 |
ADJ62817.1 | ADJ63882.1 | Hsero_1301 | Hsero_2383 | SMC domain protein. | DNA polymerase IV protein. | 0.413 |
ADJ62817.1 | dnaN | Hsero_1301 | Hsero_0002 | SMC domain protein. | DNA polymerase III subunit beta protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initia [...] | 0.506 |
ADJ62817.1 | holB | Hsero_1301 | Hsero_2600 | SMC domain protein. | DNA polymerase III delta subunit protein. | 0.644 |
ADJ62817.1 | polA | Hsero_1301 | Hsero_0454 | SMC domain protein. | DNA polymerase I protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.957 |
ADJ62817.1 | polB | Hsero_1301 | Hsero_2440 | SMC domain protein. | DNA polymerase II protein. | 0.695 |
ADJ63708.1 | ADJ63770.1 | Hsero_2209 | Hsero_2271 | Conserved hypothetical protein; S - Function unknown. | ATP-dependent DNA ligase protein. | 0.779 |
ADJ63708.1 | ku | Hsero_2209 | Hsero_2270 | Conserved hypothetical protein; S - Function unknown. | Ku domain containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.666 |
ADJ63770.1 | ADJ62072.1 | Hsero_2271 | Hsero_0553 | ATP-dependent DNA ligase protein. | Conserved hypothetical protein; S - Function unknown. | 0.680 |
ADJ63770.1 | ADJ62817.1 | Hsero_2271 | Hsero_1301 | ATP-dependent DNA ligase protein. | SMC domain protein. | 0.740 |
ADJ63770.1 | ADJ63708.1 | Hsero_2271 | Hsero_2209 | ATP-dependent DNA ligase protein. | Conserved hypothetical protein; S - Function unknown. | 0.779 |
ADJ63770.1 | ADJ63778.1 | Hsero_2271 | Hsero_2279 | ATP-dependent DNA ligase protein. | Exonuclease of the beta-lactamase fold involved in RNA processing protein. | 0.787 |
ADJ63770.1 | ADJ63882.1 | Hsero_2271 | Hsero_2383 | ATP-dependent DNA ligase protein. | DNA polymerase IV protein. | 0.864 |
ADJ63770.1 | dnaN | Hsero_2271 | Hsero_0002 | ATP-dependent DNA ligase protein. | DNA polymerase III subunit beta protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initia [...] | 0.909 |
ADJ63770.1 | holB | Hsero_2271 | Hsero_2600 | ATP-dependent DNA ligase protein. | DNA polymerase III delta subunit protein. | 0.672 |
ADJ63770.1 | ku | Hsero_2271 | Hsero_2270 | ATP-dependent DNA ligase protein. | Ku domain containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.989 |
ADJ63770.1 | polA | Hsero_2271 | Hsero_0454 | ATP-dependent DNA ligase protein. | DNA polymerase I protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.925 |
ADJ63770.1 | polB | Hsero_2271 | Hsero_2440 | ATP-dependent DNA ligase protein. | DNA polymerase II protein. | 0.699 |
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