STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hlyDHemolysin secretion-related transmembrane protein. (447 aa)    
Predicted Functional Partners:
cyaB
ABC-type bacteriocin/lantibiotic (cyclolysin-type) secretion transporter protein.
 
 0.981
sunT
ATP-binding cassette, subfamily C, bacterial LapB; ABC-type bacteriocin/lantibiotic exporter, containing an N-terminal double-glycine peptidase domain protein.
 
 0.921
ADJ63316.1
ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein; Contain an N-terminal double-glycine peptidase domain.
 
 0.917
tolC-3
Outer membrane channel lipoprotein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
 
 0.913
ADJ64370.1
Calcium binding secreted hemolysin protein.
 
  
 0.904
ADJ64374.1
Hemolysin-type calcium binding protein.
 
  
 0.877
macB
ABC-type antimicrobial peptide transport system, ATPase component protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.784
ADJ64369.1
Calcium binding secreted hemolysin protein.
 
  
 0.757
ADJ64083.1
Hemolysin-type calcium binding protein.
 
  
 0.698
ADJ63312.1
Outer membrane protein.
 
 
 0.638
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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