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ppc protein (Herbaspirillum seropedicae) - STRING interaction network
"ppc" - Phosphoenolpyruvate carboxylase in Herbaspirillum seropedicae
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppcPhosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle (970 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase large subunit oxidoreductase (1558 aa)
     
   
  0.978
gltA
Citrate synthase (456 aa)
     
 
  0.969
pykA
Pyruvate kinase II protein (477 aa)
     
 
  0.945
eno
Enolase; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (427 aa)
     
 
  0.945
aspC
Aspartate aminotransferase (409 aa)
   
   
  0.927
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate (329 aa)
     
 
  0.919
Hsero_3583
Aspartate/tyrosine/aromatic aminotransferase (393 aa)
         
  0.915
Hsero_1269
Citrate synthase (431 aa)
     
 
  0.913
cynT
Carbonic anhydrase; Reversible hydration of carbon dioxide (212 aa)
   
 
  0.911
ppsA
Phosphoenolpyruvate synthase (791 aa)
         
  0.909
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae, H. seropedicae SmR1, Herbaspirillum, Herbaspirillum seropedicae, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1, Herbaspirillum seropedicense, Herbispirillum, Herbispirillum seropedicense
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