• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
ppc protein (Herbaspirillum seropedicae) - STRING interaction network
"ppc" - Phosphoenolpyruvate carboxylase in Herbaspirillum seropedicae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppcPhosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family (970 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase (Large subunit) oxidoreductase protein; E - Amino acid transport and metabolism (1558 aa)
   
   
  0.962
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family (791 aa)
         
  0.958
pykA
Pyruvate kinase; G - Carbohydrate transport and metabolism; Belongs to the pyruvate kinase family (477 aa)
     
 
  0.953
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate (329 aa)
     
 
  0.952
aceB
Malate synthase; C - Energy production and conversion; Belongs to the malate synthase family (528 aa)
       
  0.950
cynT
Carbonic anhydrase; Reversible hydration of carbon dioxide (212 aa)
   
 
  0.940
aspC
Aspartate aminotransferase protein; E - Amino acid transport and metabolism (409 aa)
   
   
  0.931
Hsero_1269
Citrate synthase protein; C - Energy production and conversion (431 aa)
   
 
  0.927
gltA
Citrate synthase; C - Energy production and conversion; Belongs to the citrate synthase family (456 aa)
     
 
  0.925
mqo
Probable malate-quinone oxidoreductase; R - General function prediction only (549 aa)
         
  0.921
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
Server load: low (12%) [HD]