STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ64874.1ABC-type sugar transport system, periplasmic component protein. (433 aa)    
Predicted Functional Partners:
ADJ64875.1
ABC-type sugar transport system, permease component protein.
 
 0.993
ADJ64876.1
ABC-type sugar transport system, permease component protein.
 
 
 0.941
ADJ61967.1
ABC-type sugar transport system, permease component protein.
 
 
 0.897
ADJ61966.1
ABC-type sugar transport system, permease component protein.
 
 
 0.889
ADJ64878.1
ABC-type sugar transport system, ATPase component protein; Belongs to the ABC transporter superfamily.
 
 
 0.804
ADJ66018.1
ABC-type sugar transport system, permease component protein.
 
 
 0.750
ADJ66017.1
ABC-type sugar transport system, permease component protein.
 
 
 0.712
ADJ64821.1
ABC-type sugar transport system, permease component protein.
 
 
 0.686
ADJ64877.1
D-xylulose reductase protein.
 
     0.668
ADJ61796.1
ABC-type sugar transport system, permease component protein.
 
 
 0.666
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.