STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ65049.1Lipid A core - O-antigen ligase protein. (402 aa)    
Predicted Functional Partners:
rfaJ-2
UDP-glucose:(glucosyl) LPS alpha 1,3-glucosyltransferase WaaO protein.
  
 
 0.925
rfaC
ADP-heptose:LPS heptosyltransferase protein.
  
 
 0.921
kdtA
3-deoxy-d-manno-octulosonic-acid (KDO) transferase protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.912
rfaL
Lipid A core - O-antigen ligase protein.
  
  
 
0.908
epsB
Glucosyltransferase involved in lipopolysaccharide synthesis protein.
  
  
 0.812
epsQ
GDP-mannose pyrophosphorylase protein; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.658
dnaE-2
DNA polymerase III (alpha chain) protein.
       0.465
ADJ64082.1
Conserved hypothetical protein; S - Function unknown.
  
     0.447
ADJ65679.1
Lipopolysaccharide biosynthesis protein.
  
  
 0.425
ugd
UDP-glucose 6-dehydrogenase protein.
 
  
 0.420
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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