STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ65609.1Permease of the drug/metabolite transporter (DMT) superfamily protein. (295 aa)    
Predicted Functional Partners:
ADJ65610.1
[4Fe-4S]-type ferredoxin protein.
  
    0.599
kdtB
Phosphopantetheine adenylyltransferase (pantetheine-Phosphate adenylyltransferase) protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.478
ADJ65613.1
Zinc protease-like signal peptide protein.
 
     0.446
ADJ65614.1
Chromosome partitioning-related ATPase of external origin protein.
 
     0.432
rseA
Transmembrane sigma-E factor negative regulatory transcription regulator protein.
  
     0.426
ADJ65615.1
Zinc protease protein.
 
     0.418
ADJ65612.1
N6-adenine-specific methylase protein.
       0.417
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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