AHE95531.1 protein (Thermocrinis ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AHE95531.1

Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)

Predicted Functional Partners:

AHE95901.1

0.773

AHE96170.1

0.705

AHE95899.1

0.458

rpsF

0.433

AHE95766.1

0.402

Your Current Organism:

Thermocrinis ruber

NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHE95531.1	AHE95766.1	THERU_01345	THERU_02675	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AHE95531.1	AHE95899.1	THERU_01345	THERU_03485	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AHE95531.1	AHE95901.1	THERU_01345	THERU_03495	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AHE95531.1	AHE96170.1	THERU_01345	THERU_05335	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AHE95531.1	rpsF	THERU_01345	THERU_07880	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.433
AHE95766.1	AHE95531.1	THERU_02675	THERU_01345	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AHE95899.1	AHE95531.1	THERU_03485	THERU_01345	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AHE95899.1	AHE95901.1	THERU_03485	THERU_03495	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
AHE95901.1	AHE95531.1	THERU_03495	THERU_01345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AHE95901.1	AHE95899.1	THERU_03495	THERU_03485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
AHE95901.1	rpsF	THERU_03495	THERU_07880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.575
AHE96170.1	AHE95531.1	THERU_05335	THERU_01345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
rpsF	AHE95531.1	THERU_07880	THERU_01345	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
rpsF	AHE95901.1	THERU_07880	THERU_03495	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575