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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA11245.1Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)    
Predicted Functional Partners:
AKA11246.1
Host specificity protein J; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.964
AKA11244.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.918
AKA11243.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.912
AKA11241.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.881
AKA11105.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.865
AKA11106.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.855
AKA11109.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.853
AKA11103.1
Host specificity protein J; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.774
wzzE_2
Wzz; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
wzzE_1
Lipopolysaccharide chain length determinant protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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