STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51786.1Acetylornithine transaminase. (452 aa)    
Predicted Functional Partners:
AEI46494.1
L-aminoadipate-semialdehyde dehydrogenase.
 0.940
AEI46890.1
Betaine-aldehyde dehydrogenase.
 0.940
AEI49202.1
Aldehyde Dehydrogenase.
 
 0.932
AEI47354.1
Aspartate 1-decarboxylase.
     
 0.916
AEI47353.1
Pantothenate synthetase.
     
 0.905
AEI47006.1
Diaminobutyrate decarboxylase.
 
 
 0.903
AEI50280.1
Peptidase M23.
 
      0.894
AEI51785.1
Nitrilase.
  
  
 0.834
AEI51912.1
Aminotransferase class V.
  
 
 0.485
AEI51787.1
Protein of unknown function UPF0118.
       0.480
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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