STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH00585.1TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.49. (1096 aa)    
Predicted Functional Partners:
EHH00584.1
SusD family protein.
 
 
   0.955
EHH00581.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.931
EHH00583.1
Fasciclin domain protein.
 
     0.927
EHH00587.1
Fasciclin domain protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.912
EHH00588.1
Fasciclin domain protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.868
EHH01218.1
SusD family protein; Psort location: OuterMembrane, score: 9.52.
  
 
   0.826
EHH01235.1
SusD family protein.
  
 
   0.826
EHH00280.1
SusD family protein; Psort location: OuterMembrane, score: 9.52.
  
 
   0.826
EHH00099.1
SusD family protein.
  
 
   0.826
EHG99133.1
SusD family protein.
  
 
   0.826
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.