A0A162TWX4 protein (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A162TWX4

Nudix hydrolase domain-containing protein. (211 aa)

Predicted Functional Partners:

A0A163CUD2

0.887

A0A162UCZ8

0.879

A0A167L0X3

0.875

A0A167QH99

0.860

A0A162T364

0.799

LSM1

0.796

A0A162N6R1

0.795

A0A167N761

0.795

LSM3

0.759

A0A167QPQ4

0.741

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162N6R1	A0A162TWX4	A0A162N6R1	A0A162TWX4	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.795
A0A162N6R1	A0A163CUD2	A0A162N6R1	A0A163CUD2	Uncharacterized protein.	Uncharacterized protein.	0.972
A0A162N6R1	A0A167L0X3	A0A162N6R1	A0A167L0X3	Uncharacterized protein.	Uncharacterized protein.	0.969
A0A162N6R1	LSM1	A0A162N6R1	A0A163DJL3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.867
A0A162N6R1	LSM3	A0A162N6R1	A0A162PW05	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.847
A0A162T364	A0A162TWX4	A0A162T364	A0A162TWX4	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	Nudix hydrolase domain-containing protein.	0.799
A0A162T364	A0A163CUD2	A0A162T364	A0A163CUD2	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	Uncharacterized protein.	0.969
A0A162T364	A0A167L0X3	A0A162T364	A0A167L0X3	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	Uncharacterized protein.	0.917
A0A162T364	LSM1	A0A162T364	A0A163DJL3	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.832
A0A162T364	LSM3	A0A162T364	A0A162PW05	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.820
A0A162TWX4	A0A162N6R1	A0A162TWX4	A0A162N6R1	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.795
A0A162TWX4	A0A162T364	A0A162TWX4	A0A162T364	Nudix hydrolase domain-containing protein.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.799
A0A162TWX4	A0A162UCZ8	A0A162TWX4	A0A162UCZ8	Nudix hydrolase domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.879
A0A162TWX4	A0A163CUD2	A0A162TWX4	A0A163CUD2	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.887
A0A162TWX4	A0A167L0X3	A0A162TWX4	A0A167L0X3	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.875
A0A162TWX4	A0A167N761	A0A162TWX4	A0A167N761	Nudix hydrolase domain-containing protein.	YjeF N-terminal domain-containing protein.	0.795
A0A162TWX4	A0A167QH99	A0A162TWX4	A0A167QH99	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.860
A0A162TWX4	A0A167QPQ4	A0A162TWX4	A0A167QPQ4	Nudix hydrolase domain-containing protein.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.741
A0A162TWX4	LSM1	A0A162TWX4	A0A163DJL3	Nudix hydrolase domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.796
A0A162TWX4	LSM3	A0A162TWX4	A0A162PW05	Nudix hydrolase domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.759