A0A167K484 protein (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A167K484

Uncharacterized protein. (129 aa)

Predicted Functional Partners:

A0A162US08

0.561

A0A162UIV0

0.479

A0A163EPL5

0.479

A0A162ZA68

0.478

A0A167J7F8

0.478

A0A162XUE9

0.469

A0A162X6K2

0.460

A0A162XA42

0.457

A0A167QLJ9

0.456

A0A162NDI8

0.444

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162NDI8	A0A167K484	MRG domain-containing protein.	Uncharacterized protein.	0.444
A0A162UIV0	A0A162US08	Homeodomain-like DNA binding domain-containing transcription factor.	ANK_REP_REGION domain-containing protein.	0.902
A0A162UIV0	A0A162X6K2	Homeodomain-like DNA binding domain-containing transcription factor.	Ubiquitin-like domain-containing protein.	0.724
A0A162UIV0	A0A162ZA68	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein; Belongs to the SKP1 family.	0.782
A0A162UIV0	A0A163EPL5	Homeodomain-like DNA binding domain-containing transcription factor.	Homeodomain-like DNA binding domain-containing transcription factor.	0.407
A0A162UIV0	A0A167J7F8	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein; Belongs to the SKP1 family.	0.782
A0A162UIV0	A0A167K484	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.479
A0A162US08	A0A162UIV0	ANK_REP_REGION domain-containing protein.	Homeodomain-like DNA binding domain-containing transcription factor.	0.902
A0A162US08	A0A162X6K2	ANK_REP_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.830
A0A162US08	A0A162ZA68	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.740
A0A162US08	A0A163EPL5	ANK_REP_REGION domain-containing protein.	Homeodomain-like DNA binding domain-containing transcription factor.	0.902
A0A162US08	A0A167J7F8	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.740
A0A162US08	A0A167K484	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.561
A0A162X6K2	A0A162UIV0	Ubiquitin-like domain-containing protein.	Homeodomain-like DNA binding domain-containing transcription factor.	0.724
A0A162X6K2	A0A162US08	Ubiquitin-like domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.830
A0A162X6K2	A0A162ZA68	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.581
A0A162X6K2	A0A163EPL5	Ubiquitin-like domain-containing protein.	Homeodomain-like DNA binding domain-containing transcription factor.	0.724
A0A162X6K2	A0A167J7F8	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.581
A0A162X6K2	A0A167K484	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.460
A0A162XA42	A0A167K484	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.457