Mo01086 protein (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mo01086

Uncharacterized protein. (110 aa)

Predicted Functional Partners:

Mo00990

0.572

Mo00022

0.559

Mo04936

0.559

Mo01257

0.537

Mo03589

0.534

Mo00061

0.533

Mo00265

0.525

Mo00865

0.525

Mo01133

0.525

Mo02810

0.525

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00022	Mo01086	G7DS22	G7DV24	Uncharacterized protein.	Uncharacterized protein.	0.559
Mo00022	Mo04936	G7DS22	G7E5Z3	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.729
Mo00061	Mo01086	G7DS60	G7DV24	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.533
Mo00061	Mo01257	G7DS60	G7DVJ5	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.999
Mo00061	Mo03589	G7DS60	G7E255	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Aamy domain-containing protein.	0.928
Mo00265	Mo01086	G7DSR3	G7DV24	Uncharacterized protein.	Uncharacterized protein.	0.525
Mo00865	Mo01086	G7DUF6	G7DV24	Uncharacterized protein.	Uncharacterized protein.	0.525
Mo00865	Mo02810	G7DUF6	G7DZY9	Uncharacterized protein.	Uncharacterized protein.	0.749
Mo00990	Mo01086	G7DUS9	G7DV24	tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]	Uncharacterized protein.	0.572
Mo01086	Mo00022	G7DV24	G7DS22	Uncharacterized protein.	Uncharacterized protein.	0.559
Mo01086	Mo00061	G7DV24	G7DS60	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.533
Mo01086	Mo00265	G7DV24	G7DSR3	Uncharacterized protein.	Uncharacterized protein.	0.525
Mo01086	Mo00865	G7DV24	G7DUF6	Uncharacterized protein.	Uncharacterized protein.	0.525
Mo01086	Mo00990	G7DV24	G7DUS9	Uncharacterized protein.	tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]	0.572
Mo01086	Mo01133	G7DV24	G7DV71	Uncharacterized protein.	Uncharacterized protein.	0.525
Mo01086	Mo01257	G7DV24	G7DVJ5	Uncharacterized protein.	Uncharacterized protein.	0.537
Mo01086	Mo02810	G7DV24	G7DZY9	Uncharacterized protein.	Uncharacterized protein.	0.525
Mo01086	Mo03589	G7DV24	G7E255	Uncharacterized protein.	Aamy domain-containing protein.	0.534
Mo01086	Mo04936	G7DV24	G7E5Z3	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.559
Mo01133	Mo01086	G7DV71	G7DV24	Uncharacterized protein.	Uncharacterized protein.	0.525