STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL73715.1PAP2 (acid phosphatase) superfamily protein; PFAM: PAP2 superfamily. (409 aa)    
Predicted Functional Partners:
AFL73498.1
PFAM: Mating pair stabilisation protein TraN.
  
     0.618
AFL73517.1
PFAM: Putative helicase.
  
     0.572
AFL73458.1
Muramidase (phage lambda lysozyme); PFAM: TraG-like protein, N-terminal region.
  
     0.566
AFL73584.1
PFAM: TraG-like protein, N-terminal region.
  
     0.542
AFL75124.1
PFAM: RyR domain.
  
     0.526
AFL73448.1
Transglycosylase family protein; PFAM: Transglycosylase SLT domain.
  
     0.503
AFL75740.1
Putative Rossmann fold nucleotide-binding protein; PFAM: Possible lysine decarboxylase.
  
     0.503
AFL73719.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase.
 
   
 0.499
AFL76077.1
PFAM: Tetratricopeptide repeat; TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
  
     0.496
AFL73489.1
Putative phage-type endonuclease; PFAM: YqaJ-like viral recombinase domain; TIGRFAM: putative phage-type endonuclease.
  
     0.495
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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