STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL74774.1PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT. (416 aa)    
Predicted Functional Partners:
AFL72310.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
   
 0.791
AFL72309.1
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.772
AFL74744.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F.
 
   
 0.763
AFL74764.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
  
  
 0.762
AFL72255.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
   
 0.759
AFL74775.1
PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
 
    
0.699
AFL74768.1
Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Localisation of periplasmic protein complexes; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ.
  
   
 0.572
AFL75076.1
LysM domain-containing protein; PFAM: LysM domain.
  
    0.542
AFL74766.1
PFAM: Pilus assembly protein, PilO.
 
  
 0.534
AFL74765.1
PFAM: Fimbrial assembly protein (PilN).
  
  
 0.503
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.