C357_11259 protein (Citreicella sp. 357) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C357_11259

Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function. (295 aa)

Predicted Functional Partners:

C357_11254

0.551

C357_20240

0.527

C357_15071

0.499

C357_21555

0.495

C357_09289

0.466

C357_04537

0.450

C357_13707

0.445

C357_02896

0.430

C357_05648

0.416

Your Current Organism:

Citreicella sp. 357

NCBI taxonomy Id: 766499
Other names: C. sp. 357

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
C357_02896	C357_11259	COG1952 Preprotein translocase subunit SecB.	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	0.430
C357_04537	C357_11259	COG2979 Uncharacterized protein conserved in bacteria.	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	0.450
C357_05648	C357_11259	DnaJ domain-containing protein; COG2214 DnaJ-class molecular chaperone.	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	0.416
C357_05648	C357_13707	DnaJ domain-containing protein; COG2214 DnaJ-class molecular chaperone.	Glutathione-regulated potassium-efflux system protein; COG0475 Kef-type K+ transport systems, membrane components.	0.525
C357_05648	C357_15071	DnaJ domain-containing protein; COG2214 DnaJ-class molecular chaperone.	GrpE protein; COG0576 Molecular chaperone GrpE (heat shock protein).	0.951
C357_05648	C357_21555	DnaJ domain-containing protein; COG2214 DnaJ-class molecular chaperone.	COG3118 Thioredoxin domain-containing protein.	0.566
C357_09289	C357_11259	COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	0.466
C357_09289	C357_13707	COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.	Glutathione-regulated potassium-efflux system protein; COG0475 Kef-type K+ transport systems, membrane components.	0.525
C357_09289	C357_15071	COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.	GrpE protein; COG0576 Molecular chaperone GrpE (heat shock protein).	0.991
C357_09289	C357_21555	COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.	COG3118 Thioredoxin domain-containing protein.	0.825
C357_11254	C357_11259	Response regulator, receiver domain protein; COG0784 FOG: CheY-like receiver.	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	0.551
C357_11259	C357_02896	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	COG1952 Preprotein translocase subunit SecB.	0.430
C357_11259	C357_04537	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	COG2979 Uncharacterized protein conserved in bacteria.	0.450
C357_11259	C357_05648	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	DnaJ domain-containing protein; COG2214 DnaJ-class molecular chaperone.	0.416
C357_11259	C357_09289	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.	0.466
C357_11259	C357_11254	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	Response regulator, receiver domain protein; COG0784 FOG: CheY-like receiver.	0.551
C357_11259	C357_13707	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	Glutathione-regulated potassium-efflux system protein; COG0475 Kef-type K+ transport systems, membrane components.	0.445
C357_11259	C357_15071	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	GrpE protein; COG0576 Molecular chaperone GrpE (heat shock protein).	0.499
C357_11259	C357_20240	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	COG2020 Putative protein-S-isoprenylcysteine methyltransferase.	0.527
C357_11259	C357_21555	Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function.	COG3118 Thioredoxin domain-containing protein.	0.495