STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W4XEV1_STRPURRM domain-containing protein. (240 aa)    
Predicted Functional Partners:
W4YJG4_STRPU
RRM domain-containing protein.
   
 
 0.964
W4Y8M7_STRPU
CBF domain-containing protein.
   
 
 0.954
W4YMK4_STRPU
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.952
W4YDA8_STRPU
Uncharacterized protein.
   
 
 0.931
W4YRD4_STRPU
Brix domain-containing protein.
   
 
 0.884
W4Y328_STRPU
CP-type G domain-containing protein.
   
 
 0.877
W4YDM9_STRPU
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
 
 0.873
W4Y0P9_STRPU
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.872
W4YFH1_STRPU
Helicase ATP-binding domain-containing protein.
   
 
 0.856
W4YS59_STRPU
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.855
Your Current Organism:
Strongylocentrotus purpuratus
NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin
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