W4Y350_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4Y350_STRPU

Uncharacterized protein. (79 aa)

Predicted Functional Partners:

W4Z3I8_STRPU

0.566

W4YRR7_STRPU

0.557

W4Y3K4_STRPU

0.545

W4YDV6_STRPU

0.545

W4Z223_STRPU

0.524

W4ZFB3_STRPU

0.524

W4YQ82_STRPU

0.458

W4Y9K3_STRPU

0.448

W4Z3Q6_STRPU

0.417

W4ZJ38_STRPU

0.405

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4Y350_STRPU	W4Y3K4_STRPU	W4Y350	W4Y3K4	Uncharacterized protein.	Uncharacterized protein.	0.545
W4Y350_STRPU	W4Y9K3_STRPU	W4Y350	W4Y9K3	Uncharacterized protein.	DHC_N1 domain-containing protein.	0.448
W4Y350_STRPU	W4YDV6_STRPU	W4Y350	W4YDV6	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.545
W4Y350_STRPU	W4YQ82_STRPU	W4Y350	W4YQ82	Uncharacterized protein.	Uncharacterized protein.	0.458
W4Y350_STRPU	W4YRR7_STRPU	W4Y350	W4YRR7	Uncharacterized protein.	Uncharacterized protein.	0.557
W4Y350_STRPU	W4Z223_STRPU	W4Y350	W4Z223	Uncharacterized protein.	Uncharacterized protein.	0.524
W4Y350_STRPU	W4Z3I8_STRPU	W4Y350	W4Z3I8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.566
W4Y350_STRPU	W4Z3Q6_STRPU	W4Y350	W4Z3Q6	Uncharacterized protein.	Uncharacterized protein.	0.417
W4Y350_STRPU	W4ZFB3_STRPU	W4Y350	W4ZFB3	Uncharacterized protein.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	0.524
W4Y350_STRPU	W4ZJ38_STRPU	W4Y350	W4ZJ38	Uncharacterized protein.	Uncharacterized protein.	0.405
W4Y3K4_STRPU	W4Y350_STRPU	W4Y3K4	W4Y350	Uncharacterized protein.	Uncharacterized protein.	0.545
W4Y3K4_STRPU	W4Y9K3_STRPU	W4Y3K4	W4Y9K3	Uncharacterized protein.	DHC_N1 domain-containing protein.	0.545
W4Y3K4_STRPU	W4YQ82_STRPU	W4Y3K4	W4YQ82	Uncharacterized protein.	Uncharacterized protein.	0.948
W4Y3K4_STRPU	W4YRR7_STRPU	W4Y3K4	W4YRR7	Uncharacterized protein.	Uncharacterized protein.	0.991
W4Y3K4_STRPU	W4Z223_STRPU	W4Y3K4	W4Z223	Uncharacterized protein.	Uncharacterized protein.	0.746
W4Y3K4_STRPU	W4Z3I8_STRPU	W4Y3K4	W4Z3I8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.980
W4Y3K4_STRPU	W4Z3Q6_STRPU	W4Y3K4	W4Z3Q6	Uncharacterized protein.	Uncharacterized protein.	0.977
W4Y3K4_STRPU	W4ZFB3_STRPU	W4Y3K4	W4ZFB3	Uncharacterized protein.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	0.746
W4Y3K4_STRPU	W4ZJ38_STRPU	W4Y3K4	W4ZJ38	Uncharacterized protein.	Uncharacterized protein.	0.975
W4Y9K3_STRPU	W4Y350_STRPU	W4Y9K3	W4Y350	DHC_N1 domain-containing protein.	Uncharacterized protein.	0.448