W4YFK0_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4YFK0_STRPU

Uncharacterized protein. (262 aa)

Predicted Functional Partners:

W4XDB0_STRPU

0.747

W4XXP5_STRPU

0.747

W4YKB1_STRPU

0.539

W4ZH90_STRPU

0.461

W4YJV1_STRPU

0.419

W4Y2P5_STRPU

0.412

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4XDB0_STRPU	W4YFK0_STRPU	W4XDB0	W4YFK0	Uncharacterized protein.	Uncharacterized protein.	0.747
W4XDB0_STRPU	W4YJV1_STRPU	W4XDB0	W4YJV1	Uncharacterized protein.	Uncharacterized protein.	0.791
W4XDB0_STRPU	W4ZH90_STRPU	W4XDB0	W4ZH90	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.871
W4XXP5_STRPU	W4YFK0_STRPU	W4XXP5	W4YFK0	Uncharacterized protein.	Uncharacterized protein.	0.747
W4XXP5_STRPU	W4YJV1_STRPU	W4XXP5	W4YJV1	Uncharacterized protein.	Uncharacterized protein.	0.791
W4XXP5_STRPU	W4ZH90_STRPU	W4XXP5	W4ZH90	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.871
W4Y2P5_STRPU	W4YFK0_STRPU	W4Y2P5	W4YFK0	Uncharacterized protein.	Uncharacterized protein.	0.412
W4YFK0_STRPU	W4XDB0_STRPU	W4YFK0	W4XDB0	Uncharacterized protein.	Uncharacterized protein.	0.747
W4YFK0_STRPU	W4XXP5_STRPU	W4YFK0	W4XXP5	Uncharacterized protein.	Uncharacterized protein.	0.747
W4YFK0_STRPU	W4Y2P5_STRPU	W4YFK0	W4Y2P5	Uncharacterized protein.	Uncharacterized protein.	0.412
W4YFK0_STRPU	W4YJV1_STRPU	W4YFK0	W4YJV1	Uncharacterized protein.	Uncharacterized protein.	0.419
W4YFK0_STRPU	W4YKB1_STRPU	W4YFK0	W4YKB1	Uncharacterized protein.	Uncharacterized protein.	0.539
W4YFK0_STRPU	W4ZH90_STRPU	W4YFK0	W4ZH90	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.461
W4YJV1_STRPU	W4XDB0_STRPU	W4YJV1	W4XDB0	Uncharacterized protein.	Uncharacterized protein.	0.791
W4YJV1_STRPU	W4XXP5_STRPU	W4YJV1	W4XXP5	Uncharacterized protein.	Uncharacterized protein.	0.791
W4YJV1_STRPU	W4YFK0_STRPU	W4YJV1	W4YFK0	Uncharacterized protein.	Uncharacterized protein.	0.419
W4YKB1_STRPU	W4YFK0_STRPU	W4YKB1	W4YFK0	Uncharacterized protein.	Uncharacterized protein.	0.539
W4ZH90_STRPU	W4XDB0_STRPU	W4ZH90	W4XDB0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.871
W4ZH90_STRPU	W4XXP5_STRPU	W4ZH90	W4XXP5	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.871
W4ZH90_STRPU	W4YFK0_STRPU	W4ZH90	W4YFK0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.461