STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W4YUV6_STRPUUncharacterized protein. (276 aa)    
Predicted Functional Partners:
W4Z1L9_STRPU
Uncharacterized protein.
    
 
 0.929
W4XDI4_STRPU
RPOLD domain-containing protein.
    
 
 0.919
W4YP91_STRPU
RPOLD domain-containing protein.
    
 
 0.919
W4XKS3_STRPU
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 
 0.854
W4YQK1_STRPU
S1 domain-containing protein.
    
 
 0.847
W4XGX0_STRPU
Uncharacterized protein.
    
 
 0.822
W4YLA3_STRPU
RNA_pol_Rpb2_6 domain-containing protein.
    
 
 0.772
W4Z0R8_STRPU
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.772
W4ZFA7_STRPU
Uncharacterized protein.
    
 
 0.772
W4Z6D7_STRPU
RNA_pol_L_2 domain-containing protein.
    
 
 0.765
Your Current Organism:
Strongylocentrotus purpuratus
NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin
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