W4ZDE7_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4ZDE7_STRPU

Uncharacterized protein. (94 aa)

Predicted Functional Partners:

W4Z7N9_STRPU

0.931

W4Z4Q6_STRPU

0.835

W4ZH31_STRPU

0.835

W4XJE8_STRPU

0.825

W4ZDW5_STRPU

0.825

W4Y2U6_STRPU

0.779

W4Y426_STRPU

0.779

W4ZF17_STRPU

0.779

W4YC88_STRPU

0.778

W4YGL6_STRPU

0.778

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4XJE8_STRPU	W4Y2U6_STRPU	W4XJE8	W4Y2U6	Cog4 domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.913
W4XJE8_STRPU	W4Y426_STRPU	W4XJE8	W4Y426	Cog4 domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.913
W4XJE8_STRPU	W4YC88_STRPU	W4XJE8	W4YC88	Cog4 domain-containing protein.	Uncharacterized protein.	0.876
W4XJE8_STRPU	W4YGL6_STRPU	W4XJE8	W4YGL6	Cog4 domain-containing protein.	Uncharacterized protein.	0.876
W4XJE8_STRPU	W4Z4Q6_STRPU	W4XJE8	W4Z4Q6	Cog4 domain-containing protein.	Uncharacterized protein.	0.941
W4XJE8_STRPU	W4Z7N9_STRPU	W4XJE8	W4Z7N9	Cog4 domain-containing protein.	Uncharacterized protein.	0.989
W4XJE8_STRPU	W4ZDE7_STRPU	W4XJE8	W4ZDE7	Cog4 domain-containing protein.	Uncharacterized protein.	0.825
W4XJE8_STRPU	W4ZF17_STRPU	W4XJE8	W4ZF17	Cog4 domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.913
W4XJE8_STRPU	W4ZH31_STRPU	W4XJE8	W4ZH31	Cog4 domain-containing protein.	Uncharacterized protein.	0.941
W4Y2U6_STRPU	W4XJE8_STRPU	W4Y2U6	W4XJE8	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Cog4 domain-containing protein.	0.913
W4Y2U6_STRPU	W4YC88_STRPU	W4Y2U6	W4YC88	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.844
W4Y2U6_STRPU	W4YGL6_STRPU	W4Y2U6	W4YGL6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.844
W4Y2U6_STRPU	W4Z4Q6_STRPU	W4Y2U6	W4Z4Q6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.892
W4Y2U6_STRPU	W4Z7N9_STRPU	W4Y2U6	W4Z7N9	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.973
W4Y2U6_STRPU	W4ZDE7_STRPU	W4Y2U6	W4ZDE7	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.779
W4Y2U6_STRPU	W4ZDW5_STRPU	W4Y2U6	W4ZDW5	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Cog4 domain-containing protein.	0.913
W4Y2U6_STRPU	W4ZH31_STRPU	W4Y2U6	W4ZH31	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.892
W4Y426_STRPU	W4XJE8_STRPU	W4Y426	W4XJE8	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Cog4 domain-containing protein.	0.913
W4Y426_STRPU	W4YC88_STRPU	W4Y426	W4YC88	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.844
W4Y426_STRPU	W4YGL6_STRPU	W4Y426	W4YGL6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.844