STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W4ZI81_STRPUUncharacterized protein. (494 aa)    
Predicted Functional Partners:
W4Y8D4_STRPU
Matrin-type domain-containing protein.
   
 0.995
W4XW68_STRPU
Matrin-type domain-containing protein.
   
 0.991
W4XFJ7_STRPU
Uncharacterized protein.
   
 0.940
W4XMG5_STRPU
Uncharacterized protein.
   
 0.932
W4ZF59_STRPU
Ubiquitin-like domain-containing protein.
 
     0.930
W4ZIF2_STRPU
Uncharacterized protein.
   
 0.921
W4YLP1_STRPU
Matrin-type domain-containing protein.
   
 0.919
W4YA42_STRPU
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.906
W4Y227_STRPU
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.901
W4Z7I1_STRPU
SF3b1 domain-containing protein.
   
 0.890
Your Current Organism:
Strongylocentrotus purpuratus
NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin
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