STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV04869.1Hypothetical protein. (387 aa)    
Predicted Functional Partners:
ALV06727.1
Hypothetical protein.
  
     0.641
ALV08910.1
Phosphohydrolase; Pfam:pfam11871 Domain of unknown function (DUF3391).
  
     0.571
ALV05830.1
Hypothetical protein; Pfam:pfam08668 HDOD domain.
  
 
   0.449
ALV05278.1
Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
   0.442
ALV05107.1
Hypothetical protein.
  
     0.434
ALV06052.1
Pfam:pfam00072 Response regulator receiver domain.
  
 
   0.430
ALV08948.1
Two component response regulator sensor histidine kinase/response regulator subunits; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
     
 0.416
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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