STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFC86188.1PFAM: ImpA-related N-terminal; TIGRFAM: type VI secretion-associated protein, ImpA family. (352 aa)    
Predicted Functional Partners:
AFC86189.1
PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family.
 
  
 0.986
AFC86194.1
PFAM: Protein of unknown function (DUF1305); TIGRFAM: type VI secretion protein, VC_A0111 family.
 
  
 0.984
AFC86191.1
Hemolysin-coregulated protein (uncharacterized); PFAM: Protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family.
 
  
 0.975
AFC86190.1
PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.962
AFC86195.1
Rhs element Vgr protein; PFAM: Phage-related baseplate assembly protein; Phage late control gene D protein (GPD); TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein.
 
  
 0.957
AFC86202.1
PFAM: OmpA family; Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein.
 
  
 0.935
AFC86193.1
PFAM: Bacterial protein of unknown function (DUF879); TIGRFAM: type VI secretion protein, VC_A0110 family.
 
  
 0.921
AFC86192.1
PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein.
 
  
 0.919
AFC86201.1
PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family.
 
  
 0.910
AFC86203.1
Type VI secretion protein IcmF; PFAM: Protein of unknown function (DUF1215); Intracellular multiplication and human macrophage-killing; TIGRFAM: type VI secretion protein IcmF.
 
  
 0.892
Your Current Organism:
Frateuria aurantia
NCBI taxonomy Id: 767434
Other names: F. aurantia DSM 6220, Frateuria aurantia DSM 6220, Frateuria aurantia IFO 3245, Frateuria aurantia str. DSM 6220, Frateuria aurantia strain DSM 6220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.