STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkBDNA repair system specific for alkylated DNA; Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 - Homo sapiens (Human), High confidence in function and specificity. (207 aa)    
Predicted Functional Partners:
HELO_2531
Hypothetical protein; Probable lipid phosphate phosphatase PPAPDC3 - Homo sapiens (Human),InterPro: PA-phosphatase related phosphoesterase, High confidence in function and specificity.
 
     0.874
HELO_2532
Glycosyl transferase, group 1; Glycogen synthase - Synechococcus sp. (strain WH7803),InterPro: Glycosyl transferase group 1, Specificity unclear.
       0.848
nlpD
Peptidoglycan-binding LysM; Lipoprotein nlpD precursor - Salmonella dublin,InterPro: Peptidase M23/M37, Specificity unclear.
       0.738
yihG
Probable acyltransferase yihG - Escherichia coli (strain K12),InterPro: Phospholipid/glycerol acyltransferase, High confidence in function and specificity.
       0.738
panE
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.654
ada
Bifunctional regulatory protein/DNA repair protein; Regulatory protein ada - Escherichia coli (strain K12),InterPro: Helix-turn-helix AraC type, High confidence in function and specificity.
  
  
 0.524
HELO_1507
Transcriptional regulator, AraC family; Putative regulatory protein ada - Mycobacterium tuberculosis,InterPro: HhH-GPD, High confidence in function and specificity.
  
  
 0.518
HELO_2536
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
       0.464
aacs
acetoacetyl-CoA synthetase.
     
 0.456
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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