STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_3970ABC-type transport system periplasmic substrate-binding protein. (327 aa)    
Predicted Functional Partners:
HELO_1193
ABC-type transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.971
HELO_3968
ABC-type transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.971
HELO_1192
ABC-type transport system ATP-binding protein; Contains 2 ATP-binding domains.
 
 0.970
HELO_3969
ABC-type transport system ATP-binding protein; Contains 2 ATP-binding domains.
 
 0.969
HELO_1194
ABC-type transport system periplasmic substrate-binding protein.
  
  
 
0.912
gacS
Signal transduction histidine-protein kinase barA -Shigella flexneri,InterPro: Histidine kinase, High confidence in function and specificity.
   
 
 0.875
HELO_3700
Hybrid signal transduction histidine kinase K -Dictyostelium discoideum (Slime mold),InterPro: Histidine kinase, Specificity unclear.
   
 
 0.875
rbsC
ABC-type transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.865
araH
ABC-type transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.863
rbsA
ABC-type transport system ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.849
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.