STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfc24Hypothetical protein; Glycyl-glycine endopeptidase ALE-1 precursor -Staphylococcus capitis, Hypothetical protein. (142 aa)    
Predicted Functional Partners:
tfc23
Hypothetical protein; Alanyl-tRNA synthetase - Streptomyces coelicolor,Hypothetical protein.
 
     0.885
tfc22
Hypothetical protein; Protocadherin gamma-A11 precursor - Homo sapiens (Human), Hypothetical protein.
 
     0.885
tfc19
Hypothetical protein; RNA-binding post-transcriptional regulator cip2 -Schizosaccharomyces pombe (Fission yeast), Hypothetical protein.
 
     0.830
tfc11
Hypothetical protein predicted by Glimmer/Critica.
 
     0.800
tfc12
Hypothetical protein.
 
     0.800
tfc13
Hypothetical protein; DNA-directed RNA polymerase subunit beta -Acidothermus cellulolyticus (strain ATCC 43068 / 11B),Hypothetical protein.
 
     0.800
tfc14
Putative secreted protein; Pleckstrin homology-like domain family B member 1 -Rattus norvegicus (Rat), High confidence in function and specificity.
 
     0.800
tfc15
Alginate biosynthesis protein algK precursor -Pseudomonas syringae pv. tomato, Hypothetical protein.
 
     0.800
tfc16
Probable conjugal transfer protein trbE part 2 -Rhizobium sp. (strain NGR234), Hypothetical protein.
 
     0.788
tfc6
Hypothetical protein; Dihydroxy-acid dehydratase - Mycobacterium sp. (strain JLS), Hypothetical protein.
 
     0.783
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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