STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGV17984.1KEGG: alv:Alvin_0013 outer membrane efflux protein. (410 aa)    
Predicted Functional Partners:
EGV17985.1
KEGG: alv:Alvin_0014 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Biotin/lipoyl attachment; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.974
EGV17986.1
KEGG: alv:Alvin_0015 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.961
EGV18920.1
KEGG: tgr:Tgr7_1569 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD.
 
 0.920
EGV20130.1
KEGG: mgm:Mmc1_3187 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.910
EGV17988.1
KEGG: alv:Alvin_0016 hypothetical protein.
 
     0.898
EGV19313.1
PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: alv:Alvin_1308 hypothetical protein.
  
     0.752
EGV16052.1
PFAM: Protein of unknown function DUF6, transmembrane; KEGG: mgm:Mmc1_3244 hypothetical protein.
  
     0.739
EGV17581.1
PFAM: O-antigen ligase-related; KEGG: alv:Alvin_3062 O-antigen polymerase.
  
     0.699
EGV19960.1
Putative PAS/PAC sensor protein; TIGRFAM: PAS; PFAM: PAS fold; Secretion protein HlyD; KEGG: glo:Glov_0748 putative PAS/PAC sensor protein; SMART: PAS.
  
 0.669
EGV18950.1
KEGG: alv:Alvin_1046 hypothetical protein.
  
     0.669
Your Current Organism:
Thiocapsa marina
NCBI taxonomy Id: 768671
Other names: T. marina 5811, Thiocapsa marina 5811, Thiocapsa marina str. 5811, Thiocapsa marina strain 5811
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