STRINGSTRING
tdcF protein (Thermoproteus tenax) - STRING interaction network
"tdcF" - Translation initiation inhibitor in Thermoproteus tenax
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdcFTranslation initiation inhibitor (125 aa)    
Predicted Functional Partners:
rph
Exosome complex exonuclease 1; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3’->5’ exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails (245 aa)
       
    0.850
TTX_0015
Hypothetical protein (111 aa)
              0.829
fusA
Elongation factor aEF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (740 aa)
     
  0.803
putA
1-pyrroline-5-carboxylate dehydrogenase (522 aa)
   
  0.733
gapN
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase, NAD(P) dependent (501 aa)
   
  0.733
TTX_1101
Succinyl-CoA reductase (472 aa)
   
  0.733
TTX_0016
Hypothetical protein (184 aa)
              0.723
tuf
Translation elongation factor aEF-1 subunit alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (444 aa)
   
        0.653
rpoK
DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (112 aa)
         
  0.631
ilvA
Threonine dehydratase (404 aa)
   
   
  0.627
Your Current Organism:
Thermoproteus tenax
NCBI taxonomy Id: 768679
Other names: T. tenax, T. tenax Kra 1, Thermoproteus tenax, Thermoproteus tenax DSM 2078, Thermoproteus tenax JCM 9277, Thermoproteus tenax Kra 1, Thermoproteus tenax str. Kra 1, Thermoproteus tenax strain Kra 1
Server load: low (7%) [HD]