STRINGSTRING
secY protein (Thermoproteus tenax) - STRING interaction network
"secY" - Sec translocase subunit alpha in Thermoproteus tenax
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secYSec translocase subunit alpha (473 aa)    
Predicted Functional Partners:
rpl24p
50S ribosomal protein L24p; Located at the polypeptide exit tunnel on the outside of the subunit (126 aa)
 
  0.998
rpl23p
50S ribosomal protein L23p; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome (83 aa)
 
  0.998
rpl5
50S ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (184 aa)
   
  0.998
rpl22
Ribosomal protein L22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (176 aa)
 
  0.998
rpl
50S ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome (148 aa)
   
  0.996
rpl15
50S ribosomal protein L15; Binds to the 23S rRNA (157 aa)
   
 
  0.996
rpl18
50S ribosomal protein L18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (203 aa)
 
  0.996
rpl4
Putative secreted protein; Forms part of the polypeptide exit tunnel (283 aa)
 
  0.994
rpl1
50S ribosomal protein L1p; Binds directly to 23S rRNA. Probably involved in E site tRNA release (223 aa)
   
  0.990
rpoD
DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (281 aa)
 
   
  0.990
Your Current Organism:
Thermoproteus tenax
NCBI taxonomy Id: 768679
Other names: T. tenax, T. tenax Kra 1, Thermoproteus tenax, Thermoproteus tenax DSM 2078, Thermoproteus tenax JCM 9277, Thermoproteus tenax Kra 1, Thermoproteus tenax str. Kra 1, Thermoproteus tenax strain Kra 1
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