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ybiK protein (Thermoproteus tenax) - STRING interaction network
"ybiK" - L-asparaginase in Thermoproteus tenax
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiKL-asparaginase (269 aa)    
Predicted Functional Partners:
rps13
30S ribosomal protein S13p; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement (154 aa)
         
  0.871
rps4
30S ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (172 aa)
              0.871
TTX_1561
cob(I)alamin adenosyltransferase (189 aa)
              0.795
aspB-2
Aspartate aminotransferase (333 aa)
       
  0.687
TTX_1733
Aspartate aminotransferase (338 aa)
       
  0.687
TTX_0849
Aspartate aminotransferase (394 aa)
       
  0.687
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps (302 aa)
   
   
  0.618
asnB
Asparagine synthase (glutamine-hydrolyzing) (295 aa)
         
  0.520
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) (405 aa)
              0.465
dapE
Succinyl-diaminopimelate desuccinylase (414 aa)
         
  0.429
Your Current Organism:
Thermoproteus tenax
NCBI taxonomy Id: 768679
Other names: T. tenax, T. tenax Kra 1, Thermoproteus tenax, Thermoproteus tenax DSM 2078, Thermoproteus tenax JCM 9277, Thermoproteus tenax Kra 1, Thermoproteus tenax str. Kra 1, Thermoproteus tenax strain Kra 1
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