STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY98658.1TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: psp:PSPPH_0134 hypothetical protein (179 aa)    
Predicted Functional Partners:
ABY98659.1
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: psp:PSPPH_0133 hypothetical protein
 
 0.995
ABY98662.1
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: psp:PSPPH_0130 ImpH
 
  
 0.957
ABY98663.1
Type VI secretion ATPase, ClpV1 family; KEGG: psp:PSPPH_0129 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family
 
  
 0.953
ABY99117.1
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: maq:Maqu_3732 protein of unknown function DUF877
 
 0.952
ABY98661.1
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: psb:Psyr_4956 protein of unknown function DUF879
 
  
 0.951
ABY98660.1
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: psp:PSPPH_0132 protein of unknown function (DUF1316) subfamily
 
  
 0.947
ABY98665.1
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: psb:Psyr_4960 protein of unknown function DUF876
 
  
 0.940
ABY98666.1
KEGG: psp:PSPPH_0126 hypothetical protein
 
  
 0.932
ABY98669.1
PFAM: OmpA/MotB domain protein; KEGG: psp:PSPPH_0123 OmpA domain protein
 
  
 0.932
ABY98670.1
TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_0122 hypothetical protein
 
 
 0.925
Your Current Organism:
Pseudomonas putida GB1
NCBI taxonomy Id: 76869
Other names: P. putida GB-1, Pseudomonas putida GB-1, Pseudomonas putida GB1
Server load: low (12%) [HD]