STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFQ43344.1PFAM: Coat F domain. (134 aa)    
Predicted Functional Partners:
AFQ43345.1
Hypothetical protein.
 
    0.942
AFQ43342.1
Hypothetical protein.
 
    0.904
AFQ43343.1
Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
 
    0.844
AFQ44695.1
PFAM: Protein kinase domain.
  
     0.736
AFQ43890.1
PFAM: Spore germination protein.
  
     0.649
AFQ43750.1
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily.
  
     0.632
AFQ43891.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.605
AFQ43341.1
PFAM: Coat F domain.
 
    
0.584
AFQ43626.1
Putative membrane protein; PFAM: Domain of Unknown Function (DUF350).
  
     0.552
AFQ45924.1
PFAM: EamA-like transporter family.
  
     0.502
Your Current Organism:
Desulfosporosinus meridiei
NCBI taxonomy Id: 768704
Other names: D. meridiei DSM 13257, Desulfosporosinus meridiei DSM 13257, Desulfosporosinus meridiei str. DSM 13257, Desulfosporosinus meridiei strain DSM 13257, Desulfosporosinus sp. S10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.